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2IYK

Crystal structure of the UPF2-interacting domain of nonsense mediated mRNA decay factor UPF1

Functional Information from GO Data
ChainGOidnamespacecontents
A0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
A0003723molecular_functionRNA binding
A0003724molecular_functionRNA helicase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0008270molecular_functionzinc ion binding
B0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
B0003723molecular_functionRNA binding
B0003724molecular_functionRNA helicase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0008270molecular_functionzinc ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A1163
ChainResidue
ACYS13
ACYS16
ACYS35
AHIS45

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A1164
ChainResidue
ACYS27
ASER30
AHIS49
ACYS55

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A1165
ChainResidue
ACYS76
ACYS99
ACYS103
ACYS73

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B1163
ChainResidue
BCYS13
BCYS16
BCYS35
BHIS45

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B1164
ChainResidue
BCYS27
BSER30
BHIS49
BCYS55

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B1165
ChainResidue
BCYS73
BCYS76
BCYS99
BCYS103

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01341
ChainResidueDetails
ACYS13
ACYS76
ACYS99
ACYS103
BCYS13
BCYS16
BCYS27
BSER30
BCYS35
BHIS45
BHIS49
ACYS16
BCYS55
BCYS73
BCYS76
BCYS99
BCYS103
ACYS27
ASER30
ACYS35
AHIS45
AHIS49
ACYS55
ACYS73

219140

PDB entries from 2024-05-01

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