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2DEM

Crystal structure of Uracil-DNA glycosylase in complex with AP:A containing DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0004844molecular_functionuracil DNA N-glycosylase activity
A0006281biological_processDNA repair
A0006284biological_processbase-excision repair
A0016787molecular_functionhydrolase activity
A0033958molecular_functionDNA-deoxyinosine glycosylase activity
A0046872molecular_functionmetal ion binding
A0051536molecular_functioniron-sulfur cluster binding
A0051539molecular_function4 iron, 4 sulfur cluster binding
A0097506molecular_functiondeaminated base DNA N-glycosylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SF4 A 220
ChainResidue
ACYS13
ALEU15
ACYS16
ALEU19
ACYS115
ACYS130

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 2HP A 1001
ChainResidue
ASER65
APHE72
AASP75
AHOH1056
AHOH1077
CORP8
AALA59
APRO60
AGLY61

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 2HP D 1002
ChainResidue
AARG31
AGLU50
AHOH1229
DDC13
DDA14

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1003
ChainResidue
APHE72
ATHR73
AGLY74
AASP75
AGLU95
ASER96

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1004
ChainResidue
APRO37
ATYR38
ALEU84
AGLU87
AARG203
AHOH1015
AHOH1086
AHOH1143

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH A 1005
ChainResidue
ATHR202
AARG203
AHOH1137
AHOH1165

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|Ref.4, ECO:0007744|PDB:2D3Y, ECO:0007744|PDB:2DDG, ECO:0007744|PDB:2DEM
ChainResidueDetails
ACYS13
ACYS16
ACYS115
ACYS130

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PDB entries from 2024-06-12

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