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1YXO

Crystal Structure of pyridoxal phosphate biosynthetic protein PdxA PA0593

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005737cellular_componentcytoplasm
A0008270molecular_functionzinc ion binding
A0008615biological_processpyridoxine biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0042823biological_processpyridoxal phosphate biosynthetic process
A0046872molecular_functionmetal ion binding
A0050570molecular_function4-hydroxythreonine-4-phosphate dehydrogenase activity
A0050897molecular_functioncobalt ion binding
A0051287molecular_functionNAD binding
B0000287molecular_functionmagnesium ion binding
B0005737cellular_componentcytoplasm
B0008270molecular_functionzinc ion binding
B0008615biological_processpyridoxine biosynthetic process
B0016491molecular_functionoxidoreductase activity
B0042823biological_processpyridoxal phosphate biosynthetic process
B0046872molecular_functionmetal ion binding
B0050570molecular_function4-hydroxythreonine-4-phosphate dehydrogenase activity
B0050897molecular_functioncobalt ion binding
B0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 5000
ChainResidue
AHIS1265
AEOH3000
AHOH4033
AHOH4059
BHIS1210

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 5001
ChainResidue
BEOH3001
BHOH4073
AHIS1210
AHOH4139
BHIS1165
BHIS1265

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EOH A 3000
ChainResidue
AMSE1150
AHIS1165
AHIS1265
ALEU1269
AASP1295
AHOH4033
AHOH4059
AMG5000

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EOH B 3001
ChainResidue
AHOH4139
AMG5001
BMSE1150
BHIS1165
BHIS1265
BLEU1269
BASP1295
BHOH4073

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH A 3002
ChainResidue
ACYS1107
APHE1112
AASN1126
AHOH4029

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH A 3003
ChainResidue
AHIS1210
APRO1244
AASP1246
ATHR1247

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH B 3004
ChainResidue
BTHR1163
BTHR1164
BLEU1166
BARG1179

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 3005
ChainResidue
ALYS1273
AASP1295

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EOH A 3006
ChainResidue
AGLU1064
AARG1065
AALA1140
AASP1141
AHIS1144
ATHR1145
AALA1146

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A 3007
ChainResidue
AGLU1043
APRO1082
AVAL1083

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH B 3008
ChainResidue
BARG1004
BTRP1062
BHIS1111

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EOH B 3009
ChainResidue
BGLY1156
BLEU1157
BARG1158
BLEU1254
BCYS1257
BASP1258
BHOH4360

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00536
ChainResidueDetails
AASN1282
AARG1291
BHIS1135
BTHR1136
BHIS1165
BHIS1210
BHIS1265
BLYS1273
BASN1282
BARG1291
AHIS1135
ATHR1136
AHIS1165
AHIS1210
AHIS1265
ALYS1273

221051

PDB entries from 2024-06-12

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