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1XEN

High Resolution Crystal Structure of Escherichia coli Iron- Peptide Deformylase Bound To Formate

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0006412biological_processtranslation
A0008198molecular_functionferrous iron binding
A0008270molecular_functionzinc ion binding
A0016787molecular_functionhydrolase activity
A0042586molecular_functionpeptide deformylase activity
A0043022molecular_functionribosome binding
A0043686biological_processco-translational protein modification
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE A 201
ChainResidue
AGLN50
ACYS90
AHIS132
AHIS136
AFMT301

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMT A 301
ChainResidue
AHIS132
AGLU133
AHIS136
AFE201
AHOH407
AGLY45
AGLN50
ACYS90
ALEU91

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT A 302
ChainResidue
AARG69
AVAL71
AARG113
APRO148
AHOH322
AHOH325
AHOH385
AHOH481

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 303
ChainResidue
AGLY89
ACYS129
AHIS132
AHOH406
AHOH407

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A 304
ChainResidue
AGLU42
AARG66
AARG109
APRO117
AGLU119
AHOH359
AHOH404

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 305
ChainResidue
AGLU79
ALYS80
AHOH364
AHOH365
AHOH441

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 306
ChainResidue
AILE8
APRO9
AASP10
AARG14
AHOH445

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:9846875
ChainResidueDetails
AMET134

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:9846875
ChainResidueDetails
ALEU91
AGLU133
ALEU137

Catalytic Information from CSA
site_idMCSA1
Number of Residues7
DetailsM-CSA 98
ChainResidueDetails
ALEU46activator, hydrogen bond acceptor
AVAL51electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
ALEU91metal ligand
ASER92electrostatic stabiliser, hydrogen bond donor
AGLU133metal ligand
AMET134hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
ALEU137metal ligand

221051

PDB entries from 2024-06-12

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