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1VC8

Crystal Structure of a T.thermophilus HB8 Ap6A Hydrolase Ndx1-Ap6A Complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0004081molecular_functionbis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity
A0005524molecular_functionATP binding
A0006167biological_processAMP biosynthetic process
A0006754biological_processATP biosynthetic process
A0016787molecular_functionhydrolase activity
A0016818molecular_functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
A0046872molecular_functionmetal ion binding
B0004081molecular_functionbis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity
B0005524molecular_functionATP binding
B0006167biological_processAMP biosynthetic process
B0006754biological_processATP biosynthetic process
B0016787molecular_functionhydrolase activity
B0016818molecular_functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE 5FA A 501
ChainResidue
AASP21
AASN68
APRO69
AARG74
APHE110
AGLU112
AHOH503
AHOH510
AHOH534
AHOH546
AHOH592
AMET23
AHOH598
AHOH601
APHE25
ALYS30
AGLY31
AHIS32
AGLU46
AGLU50
ATYR66

site_idAC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE 5FA B 502
ChainResidue
BASP21
BMET23
BPHE25
BLYS30
BGLY31
BHIS32
BGLU46
BGLU50
BTYR66
BASN68
BPRO69
BARG74
BPHE110
BGLU112
BHOH503
BHOH507
BHOH509
BHOH519
BHOH526
BHOH543
BHOH571
BHOH590
BHOH598
BHOH612

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GhpepgEsleeAAvREVwEEtG
ChainResidueDetails
AGLY31-GLY52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|Ref.2
ChainResidueDetails
AGLU46
ATYR66
AARG74
AGLU112
BASP21
BLYS30
BGLU46
BTYR66
BARG74
BGLU112
AASP21
ALYS30

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:15024014
ChainResidueDetails
AGLU50
BGLU50

221051

PDB entries from 2024-06-12

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