1UBH

Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F

Functional Information from GO Data

Chain	GOid	namespace	contents
L	0008901	molecular_function	ferredoxin hydrogenase activity
L	0016151	molecular_function	nickel cation binding
L	0016491	molecular_function	oxidoreductase activity
L	0042597	cellular_component	periplasmic space
L	0046872	molecular_function	metal ion binding
L	0047806	molecular_function	cytochrome-c3 hydrogenase activity
S	0008901	molecular_function	ferredoxin hydrogenase activity
S	0009055	molecular_function	electron transfer activity
S	0009061	biological_process	anaerobic respiration
S	0009375	cellular_component	ferredoxin hydrogenase complex
S	0016020	cellular_component	membrane
S	0016491	molecular_function	oxidoreductase activity
S	0042597	cellular_component	periplasmic space
S	0044569	cellular_component	[Ni-Fe] hydrogenase complex
S	0046872	molecular_function	metal ion binding
S	0047806	molecular_function	cytochrome-c3 hydrogenase activity
S	0051536	molecular_function	iron-sulfur cluster binding
S	0051538	molecular_function	3 iron, 4 sulfur cluster binding
S	0051539	molecular_function	4 iron, 4 sulfur cluster binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG L 1005

Chain	Residue
L	GLU62
L	LEU498
L	HIS552
L	HOH3001
L	HOH3002
L	HOH3003

---

site_id	AC2
Number of Residues	10
Details	BINDING SITE FOR RESIDUE SF4 S 1001

Chain	Residue
S	CYS17
S	CYS20
S	THR113
S	CYS114
S	GLY149
S	CYS150
S	PRO151
L	ARG79
L	HIS235
S	GLU16

---

site_id	AC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SF4 S 1002

Chain	Residue
S	HIS188
S	CYS191
S	ARG193
S	LEU194
S	CYS216
S	LEU217
S	CYS222

---

site_id	AC4
Number of Residues	10
Details	BINDING SITE FOR RESIDUE F3S S 1003

Chain	Residue
L	GLN237
S	THR227
S	ASN229
S	CYS231
S	PHE236
S	TRP241
S	PRO242
S	CYS249
S	ILE250
S	CYS252

---

site_id	AC5
Number of Residues	13
Details	BINDING SITE FOR RESIDUE FNE L 1004

Chain	Residue
L	CYS81
L	CYS84
L	HIS88
L	ALA477
L	PRO478
L	ARG479
L	LEU482
L	VAL500
L	PRO501
L	SER502
L	CYS546
L	CYS549
L	CMO1006

---

site_id	AC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CMO L 1006

Chain	Residue
L	CYS81
L	VAL83
L	CYS84
L	ARG479
L	CYS546
L	FNE1004

---

site_id	AC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MPD S 2001

Chain	Residue
L	MET379
S	LEU194
S	ASP198
S	HOH3419
S	HOH3651

---

site_id	AC8
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MPD L 2002

Chain	Residue
L	HIS103
L	LEU192
L	GLY193
L	HOH3192
L	HOH3427
L	HOH3496
L	HOH3745

---

site_id	AC9
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MPD L 2003

Chain	Residue
L	ARG160
L	LEU167
L	ALA210
L	HIS211
L	GLU214
L	HOH3263
L	HOH3544

---

site_id	BC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MPD S 2004

Chain	Residue
S	PHE117
S	ASN134
S	LYS143
S	ASN146
S	HOH3245
S	HOH3721

---

site_id	BC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MPD L 2005

Chain	Residue
L	PHE324
L	TYR395
L	LEU410
L	PRO417
L	LEU420

---

site_id	BC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MPD S 2006

Chain	Residue
S	HIS68
S	GLY69
S	PHE70
S	TYR164
S	LEU165
S	HOH3402

---

site_id	BC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MPD S 2007

Chain	Residue
S	ALA211
S	ARG212
S	GLY214
S	ASP244
S	HOH3291

---

site_id	BC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MPD S 2008

Chain	Residue
S	ILE234
S	GLN238
S	HOH3144

---

site_id	BC6
Number of Residues	8
Details	BINDING SITE FOR RESIDUE MPD L 2009

Chain	Residue
L	MET465
L	HOH3351
L	HOH3380
L	HOH3494
L	HOH3523
L	ARG71
L	GLU348
L	TRP463

---

site_id	BC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MPD L 2010

Chain	Residue
L	GLU40
L	VAL41
L	TYR52

---

site_id	BC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MPD S 2011

Chain	Residue
L	ALA169
L	LYS173
S	ASP33
S	HOH3407

---

Functional Information from PROSITE/UniProt

site_id	PS00507
Number of Residues	26
Details	NI_HGENASE_L_1 Nickel-dependent hydrogenases large subunit signature 1. RGLEiilkgrdprdaqhftQRtCGVC

Chain	Residue	Details
L	ARG59-CYS84

---

site_id	PS00508
Number of Residues	10
Details	NI_HGENASE_L_2 Nickel-dependent hydrogenases large subunit signature 2. FDPCIACgv.H

Chain	Residue	Details
L	PHE543-HIS552

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	7
Details	BINDING: BINDING => ECO:0000269|PubMed:10378274, ECO:0000269|PubMed:9438867, ECO:0007744|PDB:1H2A, ECO:0007744|PDB:1H2R

Chain	Residue	Details
L	GLU62
S	CYS249
S	CYS252
L	CYS81
L	CYS84
L	LEU498
L	CYS546
L	CYS549
L	HIS552
S	CYS222
S	CYS231

---

Catalytic Information from CSA

site_id	CSA1
Number of Residues	3
Details	Annotated By Reference To The Literature 1cc1

Chain	Residue	Details
S	THR18
L	GLU34
L	CYS546

---

site_id	CSA2
Number of Residues	1
Details	Annotated By Reference To The Literature 1cc1

Chain	Residue	Details
L	CYS546

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