1PL0
Crystal structure of human ATIC in complex with folate-based inhibitor, BW2315U89UC
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003360 | biological_process | brainstem development |
A | 0003824 | molecular_function | catalytic activity |
A | 0003937 | molecular_function | IMP cyclohydrolase activity |
A | 0004643 | molecular_function | phosphoribosylaminoimidazolecarboxamide formyltransferase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0005886 | cellular_component | plasma membrane |
A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
A | 0006164 | biological_process | purine nucleotide biosynthetic process |
A | 0006177 | biological_process | GMP biosynthetic process |
A | 0006189 | biological_process | 'de novo' IMP biosynthetic process |
A | 0010035 | biological_process | response to inorganic substance |
A | 0016020 | cellular_component | membrane |
A | 0016740 | molecular_function | transferase activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0021549 | biological_process | cerebellum development |
A | 0021987 | biological_process | cerebral cortex development |
A | 0031100 | biological_process | animal organ regeneration |
A | 0042803 | molecular_function | protein homodimerization activity |
A | 0044208 | biological_process | 'de novo' AMP biosynthetic process |
A | 0045296 | molecular_function | cadherin binding |
A | 0046452 | biological_process | dihydrofolate metabolic process |
A | 0046654 | biological_process | tetrahydrofolate biosynthetic process |
A | 0070062 | cellular_component | extracellular exosome |
A | 0097294 | biological_process | 'de novo' XMP biosynthetic process |
A | 0098761 | biological_process | cellular response to interleukin-7 |
B | 0003360 | biological_process | brainstem development |
B | 0003824 | molecular_function | catalytic activity |
B | 0003937 | molecular_function | IMP cyclohydrolase activity |
B | 0004643 | molecular_function | phosphoribosylaminoimidazolecarboxamide formyltransferase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0005886 | cellular_component | plasma membrane |
B | 0006139 | biological_process | nucleobase-containing compound metabolic process |
B | 0006164 | biological_process | purine nucleotide biosynthetic process |
B | 0006177 | biological_process | GMP biosynthetic process |
B | 0006189 | biological_process | 'de novo' IMP biosynthetic process |
B | 0010035 | biological_process | response to inorganic substance |
B | 0016020 | cellular_component | membrane |
B | 0016740 | molecular_function | transferase activity |
B | 0016787 | molecular_function | hydrolase activity |
B | 0021549 | biological_process | cerebellum development |
B | 0021987 | biological_process | cerebral cortex development |
B | 0031100 | biological_process | animal organ regeneration |
B | 0042803 | molecular_function | protein homodimerization activity |
B | 0044208 | biological_process | 'de novo' AMP biosynthetic process |
B | 0045296 | molecular_function | cadherin binding |
B | 0046452 | biological_process | dihydrofolate metabolic process |
B | 0046654 | biological_process | tetrahydrofolate biosynthetic process |
B | 0070062 | cellular_component | extracellular exosome |
B | 0097294 | biological_process | 'de novo' XMP biosynthetic process |
B | 0098761 | biological_process | cellular response to interleukin-7 |
C | 0003360 | biological_process | brainstem development |
C | 0003824 | molecular_function | catalytic activity |
C | 0003937 | molecular_function | IMP cyclohydrolase activity |
C | 0004643 | molecular_function | phosphoribosylaminoimidazolecarboxamide formyltransferase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0005886 | cellular_component | plasma membrane |
C | 0006139 | biological_process | nucleobase-containing compound metabolic process |
C | 0006164 | biological_process | purine nucleotide biosynthetic process |
C | 0006177 | biological_process | GMP biosynthetic process |
C | 0006189 | biological_process | 'de novo' IMP biosynthetic process |
C | 0010035 | biological_process | response to inorganic substance |
C | 0016020 | cellular_component | membrane |
C | 0016740 | molecular_function | transferase activity |
C | 0016787 | molecular_function | hydrolase activity |
C | 0021549 | biological_process | cerebellum development |
C | 0021987 | biological_process | cerebral cortex development |
C | 0031100 | biological_process | animal organ regeneration |
C | 0042803 | molecular_function | protein homodimerization activity |
C | 0044208 | biological_process | 'de novo' AMP biosynthetic process |
C | 0045296 | molecular_function | cadherin binding |
C | 0046452 | biological_process | dihydrofolate metabolic process |
C | 0046654 | biological_process | tetrahydrofolate biosynthetic process |
C | 0070062 | cellular_component | extracellular exosome |
C | 0097294 | biological_process | 'de novo' XMP biosynthetic process |
C | 0098761 | biological_process | cellular response to interleukin-7 |
D | 0003360 | biological_process | brainstem development |
D | 0003824 | molecular_function | catalytic activity |
D | 0003937 | molecular_function | IMP cyclohydrolase activity |
D | 0004643 | molecular_function | phosphoribosylaminoimidazolecarboxamide formyltransferase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0005886 | cellular_component | plasma membrane |
D | 0006139 | biological_process | nucleobase-containing compound metabolic process |
D | 0006164 | biological_process | purine nucleotide biosynthetic process |
D | 0006177 | biological_process | GMP biosynthetic process |
D | 0006189 | biological_process | 'de novo' IMP biosynthetic process |
D | 0010035 | biological_process | response to inorganic substance |
D | 0016020 | cellular_component | membrane |
D | 0016740 | molecular_function | transferase activity |
D | 0016787 | molecular_function | hydrolase activity |
D | 0021549 | biological_process | cerebellum development |
D | 0021987 | biological_process | cerebral cortex development |
D | 0031100 | biological_process | animal organ regeneration |
D | 0042803 | molecular_function | protein homodimerization activity |
D | 0044208 | biological_process | 'de novo' AMP biosynthetic process |
D | 0045296 | molecular_function | cadherin binding |
D | 0046452 | biological_process | dihydrofolate metabolic process |
D | 0046654 | biological_process | tetrahydrofolate biosynthetic process |
D | 0070062 | cellular_component | extracellular exosome |
D | 0097294 | biological_process | 'de novo' XMP biosynthetic process |
D | 0098761 | biological_process | cellular response to interleukin-7 |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K A 1001 |
Chain | Residue |
A | VAL425 |
A | THR428 |
A | SER430 |
A | SER432 |
A | ASP539 |
A | LEU589 |
A | HIS591 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K B 1002 |
Chain | Residue |
B | SER430 |
B | SER432 |
B | ASP539 |
B | LEU589 |
B | HIS591 |
B | VAL425 |
B | THR428 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K C 1003 |
Chain | Residue |
C | VAL425 |
C | THR428 |
C | SER430 |
C | SER432 |
C | ASP539 |
C | LEU589 |
C | HIS591 |
site_id | AC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K D 1004 |
Chain | Residue |
D | VAL425 |
D | THR428 |
D | SER430 |
D | SER432 |
D | ASP539 |
D | LEU589 |
D | HIS591 |
site_id | AC5 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE AMZ B 702 |
Chain | Residue |
A | ARG207 |
A | TYR208 |
A | HIS267 |
A | GLY316 |
A | ASP339 |
B | ASN431 |
B | ARG451 |
B | ALA540 |
B | PHE541 |
B | ARG588 |
B | PHE590 |
B | BW2802 |
B | HOH1004 |
B | HOH1048 |
site_id | AC6 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE AMZ D 703 |
Chain | Residue |
C | ASN431 |
C | ARG451 |
C | ALA540 |
C | PHE541 |
C | ARG588 |
C | PHE590 |
D | ARG207 |
D | TYR208 |
D | LYS266 |
D | HIS267 |
D | GLY316 |
D | ASP339 |
D | HOH1021 |
D | HOH1024 |
D | HOH1041 |
D | HOH1044 |
site_id | AC7 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE AMZ D 704 |
Chain | Residue |
C | ARG207 |
C | TYR208 |
C | LYS266 |
C | HIS267 |
C | GLY316 |
C | ASP339 |
C | HOH1029 |
D | ASN431 |
D | ARG451 |
D | ALA540 |
D | PHE541 |
D | ARG588 |
D | PHE590 |
D | BW2804 |
D | HOH1019 |
site_id | AC8 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE BW2 B 802 |
Chain | Residue |
A | LYS266 |
A | MET312 |
A | PHE315 |
A | ASN489 |
B | ASN431 |
B | GLN449 |
B | ARG451 |
B | ILE452 |
B | PHE541 |
B | PRO543 |
B | PHE544 |
B | ASN547 |
B | AMZ702 |
B | HOH1079 |
site_id | AC9 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE BW2 D 804 |
Chain | Residue |
D | ASP546 |
D | ASN547 |
D | AMZ704 |
D | HOH1071 |
C | LYS266 |
C | MET312 |
C | PHE315 |
C | ASN489 |
D | ASN431 |
D | GLN449 |
D | SER450 |
D | ARG451 |
D | ILE452 |
D | PHE541 |
D | PRO543 |
D | PHE544 |
site_id | BC1 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE XMP A 901 |
Chain | Residue |
A | SER10 |
A | VAL11 |
A | SER12 |
A | LYS14 |
A | SER34 |
A | GLY36 |
A | THR37 |
A | ARG64 |
A | LYS66 |
A | THR67 |
A | LEU68 |
A | CYS101 |
A | ASN102 |
A | LEU103 |
A | TYR104 |
A | ASP125 |
A | ILE126 |
A | GLY127 |
A | GLY128 |
site_id | BC2 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE XMP C 903 |
Chain | Residue |
C | SER10 |
C | VAL11 |
C | SER12 |
C | LYS14 |
C | SER34 |
C | GLY35 |
C | GLY36 |
C | THR37 |
C | GLY63 |
C | ARG64 |
C | LYS66 |
C | THR67 |
C | LEU68 |
C | CYS101 |
C | ASN102 |
C | LEU103 |
C | TYR104 |
C | ASP125 |
C | ILE126 |
C | GLY127 |
C | GLY128 |
C | HOH1014 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Proton donor/acceptor; for FAICAR cyclization activity => ECO:0000305|PubMed:14756553 |
Chain | Residue | Details |
A | LYS137 | |
B | LYS137 | |
C | LYS137 | |
D | LYS137 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | ACT_SITE: Proton acceptor; for AICAR formyltransferase activity => ECO:0000305|PubMed:14966129 |
Chain | Residue | Details |
A | HIS267 | |
B | HIS267 | |
C | HIS267 | |
D | HIS267 |
site_id | SWS_FT_FI3 |
Number of Residues | 20 |
Details | BINDING: BINDING => ECO:0000305|PubMed:14756553, ECO:0000305|PubMed:14966129, ECO:0007744|PDB:1P4R, ECO:0007744|PDB:1PKX, ECO:0007744|PDB:1PL0 |
Chain | Residue | Details |
A | SER12 | |
B | ASP125 | |
C | SER12 | |
C | SER34 | |
C | ARG64 | |
C | CYS101 | |
C | ASP125 | |
D | SER12 | |
D | SER34 | |
D | ARG64 | |
D | CYS101 | |
A | SER34 | |
D | ASP125 | |
A | ARG64 | |
A | CYS101 | |
A | ASP125 | |
B | SER12 | |
B | SER34 | |
B | ARG64 | |
B | CYS101 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | BINDING: in other chain => ECO:0000269|PubMed:14966129, ECO:0007744|PDB:1P4R, ECO:0007744|PDB:1PL0 |
Chain | Residue | Details |
A | ARG207 | |
B | ARG207 | |
C | ARG207 | |
D | ARG207 |
site_id | SWS_FT_FI5 |
Number of Residues | 12 |
Details | BINDING: in other chain => ECO:0000269|PubMed:14966129, ECO:0000269|PubMed:29072452, ECO:0007744|PDB:1P4R, ECO:0007744|PDB:1PL0 |
Chain | Residue | Details |
A | HIS267 | |
D | HIS267 | |
D | GLY316 | |
D | ASP339 | |
A | GLY316 | |
A | ASP339 | |
B | HIS267 | |
B | GLY316 | |
B | ASP339 | |
C | HIS267 | |
C | GLY316 | |
C | ASP339 |
site_id | SWS_FT_FI6 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0000269|PubMed:14966129, ECO:0000269|PubMed:29072452, ECO:0007744|PDB:1P4R, ECO:0007744|PDB:1PL0 |
Chain | Residue | Details |
A | ASN431 | |
C | ARG451 | |
C | PHE541 | |
C | ARG588 | |
D | ASN431 | |
D | ARG451 | |
D | PHE541 | |
D | ARG588 | |
A | ARG451 | |
A | PHE541 | |
A | ARG588 | |
B | ASN431 | |
B | ARG451 | |
B | PHE541 | |
B | ARG588 | |
C | ASN431 |
site_id | SWS_FT_FI7 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:P31335 |
Chain | Residue | Details |
A | ILE452 | |
D | ILE452 | |
D | ASP546 | |
D | SER565 | |
A | ASP546 | |
A | SER565 | |
B | ILE452 | |
B | ASP546 | |
B | SER565 | |
C | ILE452 | |
C | ASP546 | |
C | SER565 |
site_id | SWS_FT_FI8 |
Number of Residues | 4 |
Details | SITE: Transition state stabilizer => ECO:0000305|PubMed:14966129 |
Chain | Residue | Details |
A | LYS266 | |
B | LYS266 | |
C | LYS266 | |
D | LYS266 |
site_id | SWS_FT_FI9 |
Number of Residues | 4 |
Details | MOD_RES: N-acetylmethionine => ECO:0007744|PubMed:19413330 |
Chain | Residue | Details |
A | MET1 | |
B | MET1 | |
C | MET1 | |
D | MET1 |
site_id | SWS_FT_FI10 |
Number of Residues | 4 |
Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | LYS199 | |
B | LYS199 | |
C | LYS199 | |
D | LYS199 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 4 |
Details | M-CSA 646 |
Chain | Residue | Details |
A | LYS266 | electrostatic stabiliser, proton acceptor, proton donor, proton relay |
A | HIS267 | electrostatic stabiliser, proton acceptor, proton donor, proton relay |
A | ASN431 | electrostatic stabiliser, modifies pKa |
A | HIS592 | electrostatic stabiliser, modifies pKa, proton acceptor, proton donor, proton relay |
site_id | MCSA2 |
Number of Residues | 4 |
Details | M-CSA 646 |
Chain | Residue | Details |
B | LYS266 | electrostatic stabiliser, proton acceptor, proton donor, proton relay |
B | HIS267 | electrostatic stabiliser, proton acceptor, proton donor, proton relay |
B | ASN431 | electrostatic stabiliser, modifies pKa |
B | HIS592 | electrostatic stabiliser, modifies pKa, proton acceptor, proton donor, proton relay |
site_id | MCSA3 |
Number of Residues | 4 |
Details | M-CSA 646 |
Chain | Residue | Details |
C | LYS266 | electrostatic stabiliser, proton acceptor, proton donor, proton relay |
C | HIS267 | electrostatic stabiliser, proton acceptor, proton donor, proton relay |
C | ASN431 | electrostatic stabiliser, modifies pKa |
C | HIS592 | electrostatic stabiliser, modifies pKa, proton acceptor, proton donor, proton relay |
site_id | MCSA4 |
Number of Residues | 4 |
Details | M-CSA 646 |
Chain | Residue | Details |
D | LYS266 | electrostatic stabiliser, proton acceptor, proton donor, proton relay |
D | HIS267 | electrostatic stabiliser, proton acceptor, proton donor, proton relay |
D | ASN431 | electrostatic stabiliser, modifies pKa |
D | HIS592 | electrostatic stabiliser, modifies pKa, proton acceptor, proton donor, proton relay |