1NOI
COMPLEX OF GLYCOGEN PHOSPHORYLASE WITH A TRANSITION STATE ANALOGUE NOJIRIMYCIN TETRAZOLE AND PHOSPHATE IN THE T AND R STATES
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0004645 | molecular_function | 1,4-alpha-oligoglucan phosphorylase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005975 | biological_process | carbohydrate metabolic process |
| A | 0005977 | biological_process | glycogen metabolic process |
| A | 0005980 | biological_process | glycogen catabolic process |
| A | 0008152 | biological_process | metabolic process |
| A | 0008184 | molecular_function | glycogen phosphorylase activity |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016757 | molecular_function | glycosyltransferase activity |
| A | 0030170 | molecular_function | pyridoxal phosphate binding |
| A | 0098723 | cellular_component | skeletal muscle myofibril |
| A | 0102250 | molecular_function | linear malto-oligosaccharide phosphorylase activity |
| A | 0102499 | molecular_function | SHG alpha-glucan phosphorylase activity |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0004645 | molecular_function | 1,4-alpha-oligoglucan phosphorylase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005975 | biological_process | carbohydrate metabolic process |
| B | 0005977 | biological_process | glycogen metabolic process |
| B | 0005980 | biological_process | glycogen catabolic process |
| B | 0008152 | biological_process | metabolic process |
| B | 0008184 | molecular_function | glycogen phosphorylase activity |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016757 | molecular_function | glycosyltransferase activity |
| B | 0030170 | molecular_function | pyridoxal phosphate binding |
| B | 0098723 | cellular_component | skeletal muscle myofibril |
| B | 0102250 | molecular_function | linear malto-oligosaccharide phosphorylase activity |
| B | 0102499 | molecular_function | SHG alpha-glucan phosphorylase activity |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0004645 | molecular_function | 1,4-alpha-oligoglucan phosphorylase activity |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005975 | biological_process | carbohydrate metabolic process |
| C | 0005977 | biological_process | glycogen metabolic process |
| C | 0005980 | biological_process | glycogen catabolic process |
| C | 0008152 | biological_process | metabolic process |
| C | 0008184 | molecular_function | glycogen phosphorylase activity |
| C | 0016740 | molecular_function | transferase activity |
| C | 0016757 | molecular_function | glycosyltransferase activity |
| C | 0030170 | molecular_function | pyridoxal phosphate binding |
| C | 0098723 | cellular_component | skeletal muscle myofibril |
| C | 0102250 | molecular_function | linear malto-oligosaccharide phosphorylase activity |
| C | 0102499 | molecular_function | SHG alpha-glucan phosphorylase activity |
| D | 0000166 | molecular_function | nucleotide binding |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0004645 | molecular_function | 1,4-alpha-oligoglucan phosphorylase activity |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005975 | biological_process | carbohydrate metabolic process |
| D | 0005977 | biological_process | glycogen metabolic process |
| D | 0005980 | biological_process | glycogen catabolic process |
| D | 0008152 | biological_process | metabolic process |
| D | 0008184 | molecular_function | glycogen phosphorylase activity |
| D | 0016740 | molecular_function | transferase activity |
| D | 0016757 | molecular_function | glycosyltransferase activity |
| D | 0030170 | molecular_function | pyridoxal phosphate binding |
| D | 0098723 | cellular_component | skeletal muscle myofibril |
| D | 0102250 | molecular_function | linear malto-oligosaccharide phosphorylase activity |
| D | 0102499 | molecular_function | SHG alpha-glucan phosphorylase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE PO4 A 997 |
| Chain | Residue |
| A | GLY135 |
| A | HOH1063 |
| A | LEU136 |
| A | ARG569 |
| A | TYR573 |
| A | LYS574 |
| A | NTZ998 |
| A | PLP999 |
| A | HOH1013 |
| A | HOH1043 |
| site_id | AC2 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE PO4 B 997 |
| Chain | Residue |
| B | GLY134 |
| B | GLY135 |
| B | ARG569 |
| B | TYR573 |
| B | LYS574 |
| B | NTZ998 |
| B | PLP999 |
| B | HOH1022 |
| B | HOH1052 |
| B | HOH1072 |
| site_id | AC3 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE PO4 C 997 |
| Chain | Residue |
| C | GLY135 |
| C | LEU136 |
| C | ARG569 |
| C | TYR573 |
| C | LYS574 |
| C | GLU672 |
| C | NTZ998 |
| C | PLP999 |
| C | HOH1013 |
| C | HOH1044 |
| C | HOH1063 |
| site_id | AC4 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE PO4 D 997 |
| Chain | Residue |
| D | GLY134 |
| D | GLY135 |
| D | LEU136 |
| D | ARG569 |
| D | TYR573 |
| D | LYS574 |
| D | NTZ998 |
| D | PLP999 |
| D | HOH1023 |
| D | HOH1053 |
| D | HOH1073 |
| site_id | AC5 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE PLP A 999 |
| Chain | Residue |
| A | TRP491 |
| A | LYS568 |
| A | LYS574 |
| A | TYR648 |
| A | ARG649 |
| A | VAL650 |
| A | ALA653 |
| A | GLY675 |
| A | THR676 |
| A | GLY677 |
| A | LYS680 |
| A | PO4997 |
| A | HOH1002 |
| A | HOH1009 |
| A | HOH1013 |
| A | HOH1016 |
| A | HOH1043 |
| site_id | AC6 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE NTZ A 998 |
| Chain | Residue |
| A | LEU136 |
| A | HIS377 |
| A | THR378 |
| A | VAL455 |
| A | ASN484 |
| A | TYR573 |
| A | GLU672 |
| A | ALA673 |
| A | SER674 |
| A | GLY675 |
| A | PO4997 |
| A | HOH1029 |
| A | HOH1043 |
| A | HOH1066 |
| site_id | AC7 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE PLP B 999 |
| Chain | Residue |
| B | TYR90 |
| B | TRP491 |
| B | LYS568 |
| B | LYS574 |
| B | TYR648 |
| B | ARG649 |
| B | VAL650 |
| B | GLY675 |
| B | THR676 |
| B | GLY677 |
| B | LYS680 |
| B | PO4997 |
| B | HOH1011 |
| B | HOH1018 |
| B | HOH1022 |
| B | HOH1025 |
| B | HOH1052 |
| site_id | AC8 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE NTZ B 998 |
| Chain | Residue |
| B | GLY675 |
| B | PO4997 |
| B | HOH1038 |
| B | HOH1052 |
| B | HOH1075 |
| B | LEU136 |
| B | LEU139 |
| B | HIS377 |
| B | THR378 |
| B | ASN484 |
| B | TYR573 |
| B | GLU672 |
| B | ALA673 |
| B | SER674 |
| site_id | AC9 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE PLP C 999 |
| Chain | Residue |
| C | TYR90 |
| C | LYS568 |
| C | LYS574 |
| C | TYR648 |
| C | ARG649 |
| C | VAL650 |
| C | GLY675 |
| C | THR676 |
| C | GLY677 |
| C | LYS680 |
| C | PO4997 |
| C | HOH1002 |
| C | HOH1009 |
| C | HOH1013 |
| C | HOH1016 |
| C | HOH1038 |
| C | HOH1044 |
| site_id | BC1 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE NTZ C 998 |
| Chain | Residue |
| C | LEU136 |
| C | HIS377 |
| C | VAL455 |
| C | ASN484 |
| C | TYR573 |
| C | GLU672 |
| C | ALA673 |
| C | SER674 |
| C | GLY675 |
| C | PO4997 |
| C | HOH1029 |
| C | HOH1044 |
| C | HOH1066 |
| site_id | BC2 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE PLP D 999 |
| Chain | Residue |
| D | TYR90 |
| D | TRP491 |
| D | LYS568 |
| D | LYS574 |
| D | ARG649 |
| D | VAL650 |
| D | ALA653 |
| D | GLY675 |
| D | THR676 |
| D | GLY677 |
| D | LYS680 |
| D | PO4997 |
| D | HOH1019 |
| D | HOH1023 |
| D | HOH1026 |
| D | HOH1047 |
| D | HOH1053 |
| site_id | BC3 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE NTZ D 998 |
| Chain | Residue |
| D | LEU136 |
| D | HIS377 |
| D | THR378 |
| D | ASN484 |
| D | TYR573 |
| D | GLU672 |
| D | ALA673 |
| D | SER674 |
| D | GLY675 |
| D | PO4997 |
| D | HOH1039 |
| D | HOH1053 |
| D | HOH1076 |
Functional Information from PROSITE/UniProt
| site_id | PS00102 |
| Number of Residues | 13 |
| Details | PHOSPHORYLASE Phosphorylase pyridoxal-phosphate attachment site. EASGtGnMKfmLN |
| Chain | Residue | Details |
| A | GLU672-ASN684 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 8 |
| Details | BINDING: BINDING => ECO:0000250|UniProtKB:P11217 |
| Chain | Residue | Details |
| A | ARG43 | |
| A | ARG310 | |
| B | ARG43 | |
| B | ARG310 | |
| C | ARG43 | |
| C | ARG310 | |
| D | ARG43 | |
| D | ARG310 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:3616621 |
| Chain | Residue | Details |
| A | GLU76 | |
| B | GLU76 | |
| C | GLU76 | |
| D | GLU76 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 8 |
| Details | SITE: Involved in the association of subunits => ECO:0000303|PubMed:728424 |
| Chain | Residue | Details |
| A | ASP109 | |
| A | PHE143 | |
| B | ASP109 | |
| B | PHE143 | |
| C | ASP109 | |
| C | PHE143 | |
| D | ASP109 | |
| D | PHE143 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | SITE: Can be labeled by an AMP analog; may be involved in allosteric regulation => ECO:0000303|PubMed:728424 |
| Chain | Residue | Details |
| A | GLY156 | |
| B | GLY156 | |
| C | GLY156 | |
| D | GLY156 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | MOD_RES: N-acetylserine => ECO:0000269|PubMed:3015680 |
| Chain | Residue | Details |
| A | ARG2 | |
| B | ARG2 | |
| C | ARG2 | |
| D | ARG2 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine; by PHK; in form phosphorylase A => ECO:0000250|UniProtKB:P11217 |
| Chain | Residue | Details |
| A | VAL15 | |
| B | VAL15 | |
| C | VAL15 | |
| D | VAL15 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 8 |
| Details | MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P09812 |
| Chain | Residue | Details |
| A | GLY204 | |
| A | ASP227 | |
| B | GLY204 | |
| B | ASP227 | |
| C | GLY204 | |
| C | ASP227 | |
| D | GLY204 | |
| D | ASP227 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q9WUB3 |
| Chain | Residue | Details |
| A | LEU430 | |
| B | LEU430 | |
| C | LEU430 | |
| D | LEU430 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:Q9WUB3 |
| Chain | Residue | Details |
| A | GLU473 | |
| B | GLU473 | |
| C | GLU473 | |
| D | GLU473 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 12 |
| Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P09812 |
| Chain | Residue | Details |
| A | ASP514 | |
| D | ASP514 | |
| D | SER747 | |
| D | GLY748 | |
| A | SER747 | |
| A | GLY748 | |
| B | ASP514 | |
| B | SER747 | |
| B | GLY748 | |
| C | ASP514 | |
| C | SER747 | |
| C | GLY748 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:7500360, ECO:0000269|PubMed:8976550, ECO:0007744|PDB:2PRI, ECO:0007744|PDB:2SKC, ECO:0007744|PDB:2SKD, ECO:0007744|PDB:2SKE |
| Chain | Residue | Details |
| A | PHE681 | |
| B | PHE681 | |
| C | PHE681 | |
| D | PHE681 |
Catalytic Information from CSA
| site_id | MCSA1 |
| Number of Residues | 6 |
| Details | M-CSA 205 |
| Chain | Residue | Details |
| A | THR378 | electrostatic stabiliser |
| A | ARG569 | electrostatic stabiliser |
| A | ILE570 | electrostatic stabiliser |
| A | ARG575 | electrostatic stabiliser |
| A | GLY677 | electrostatic stabiliser |
| A | PHE681 | covalently attached |
| site_id | MCSA2 |
| Number of Residues | 6 |
| Details | M-CSA 205 |
| Chain | Residue | Details |
| B | THR378 | electrostatic stabiliser |
| B | ARG569 | electrostatic stabiliser |
| B | ILE570 | electrostatic stabiliser |
| B | ARG575 | electrostatic stabiliser |
| B | GLY677 | electrostatic stabiliser |
| B | PHE681 | covalently attached |
| site_id | MCSA3 |
| Number of Residues | 6 |
| Details | M-CSA 205 |
| Chain | Residue | Details |
| C | THR378 | electrostatic stabiliser |
| C | ARG569 | electrostatic stabiliser |
| C | ILE570 | electrostatic stabiliser |
| C | ARG575 | electrostatic stabiliser |
| C | GLY677 | electrostatic stabiliser |
| C | PHE681 | covalently attached |
| site_id | MCSA4 |
| Number of Residues | 6 |
| Details | M-CSA 205 |
| Chain | Residue | Details |
| D | THR378 | electrostatic stabiliser |
| D | ARG569 | electrostatic stabiliser |
| D | ILE570 | electrostatic stabiliser |
| D | ARG575 | electrostatic stabiliser |
| D | GLY677 | electrostatic stabiliser |
| D | PHE681 | covalently attached |
