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1JH7

Semi-reduced Inhibitor-bound Cyclic Nucleotide Phosphodiesterase from Arabidopsis thaliana

Functional Information from GO Data
ChainGOidnamespacecontents
A0004112molecular_functioncyclic-nucleotide phosphodiesterase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006388biological_processtRNA splicing, via endonucleolytic cleavage and ligation
A0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 212
ChainResidue
ASER78
AHOH350
AHOH368
AHOH369

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 213
ChainResidue
AHOH317
AHOH392
AHOH392

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 214
ChainResidue
ASO4215
ASO4215
ASO4215

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 215
ChainResidue
AGLU28
AGLU28
AGLU28
ASO4214
ASO4214
ASO4214

site_idAC5
Number of Residues14
DetailsBINDING SITE FOR RESIDUE UVC A 201
ChainResidue
ASER10
ATRP12
AHIS42
ATHR44
ATYR50
APHE84
AHIS119
ASER121
ATYR124
ATHR161
ATHR163
ATRP171
AHOH372
AHOH373

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE UVC A 202
ChainResidue
AARG31
AARG31
AARG31
AGLY36
APRO37
AARG38
APHE39
ALEU168

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor
ChainResidueDetails
AHIS42
AHIS119

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING:
ChainResidueDetails
ATHR44
ASER121
ATYR124

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 794
ChainResidueDetails
AHIS42proton donor
ATHR44electrostatic stabiliser
AMET117electrostatic stabiliser, increase basicity
AHIS119increase nucleophilicity, proton acceptor
ASER121electrostatic stabiliser
ATYR124electrostatic stabiliser

219869

PDB entries from 2024-05-15

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