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8UP6

Structure of atypical asparaginase from Rhodospirillum rubrum (mutant K19A) in complex with L-Asp

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2022-03-20
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths72.045, 77.327, 115.025
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.890 - 1.700
R-factor0.182
Rwork0.181
R-free0.20500
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.012
RMSD bond angle1.776
Data reduction softwareHKL-2000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.00040.0001.730
High resolution limit [Å]1.7004.6101.700
Rmerge0.0680.0340.753
Rmeas0.0710.0360.786
Rpim0.0200.0110.222
Total number of observations917685
Number of reflections7108837543496
<I/σ(I)>9.2
Completeness [%]99.697.999.8
Redundancy12.911.311.9
CC(1/2)1.0000.9980.947
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2 uL 18 mg/mL protein in 50 mM HEPES, 150 mM sodium chloride, 20 mM L-Asp + 0.2 uL reservoir (Molecular Dimensions Morpheus F9 + 20 mM L-Asp, pH 8.5)

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PDB entries from 2024-05-15

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