Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8OEX

Crystal structure of the native Z-DNA duplex d(CGCGCG) before soaking of CuCl2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSEALED TUBE
Source detailsRIGAKU PhotonJet-S
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-25
DetectorRIGAKU HyPix-6000HE
Wavelength(s)1.5406
Spacegroup nameP 21 21 21
Unit cell lengths18.283, 30.764, 42.477
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution17.480 - 1.070
R-factor0.1063
Rwork0.105
R-free0.12520
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle1.396
Data reduction softwareCrysalisPro
Data scaling softwareCrysalisPro
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]18.2801.090
High resolution limit [Å]1.0701.070
Rmerge0.1830.553
Rmeas0.1990.606
Rpim0.0770.241
Number of reflections10952480
<I/σ(I)>11.43.4
Completeness [%]99.692.7
Redundancy2
CC(1/2)0.9990.868
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6291oligo, 2-methyl-2,4-pentanediol (MPD), sodium cacodylate, pH 6.0, KCl, NaCl and spermine tetrachloride

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon