8J5B
Crystal structure of P domain from norovirus GI.4 capsid protein.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B2 |
Synchrotron site | SPring-8 |
Beamline | BL26B2 |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2016-12-20 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 |
Unit cell lengths | 61.673, 62.791, 92.756 |
Unit cell angles | 91.74, 97.71, 119.07 |
Refinement procedure
Resolution | 49.800 - 1.890 |
R-factor | 0.2342 |
Rwork | 0.232 |
R-free | 0.27540 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.549 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.800 | 2.010 |
High resolution limit [Å] | 1.890 | 1.890 |
Rmeas | 0.128 | |
Rpim | 0.731 | |
Number of reflections | 90970 | 14442 |
<I/σ(I)> | 6.98 | 1.54 |
Completeness [%] | 95.9 | 94.2 |
Redundancy | 2.31 | 2.29 |
CC(1/2) | 0.990 | 0.849 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 293.15 | 0.1M tri-Sodium citrate (pH5.6), 20%(v/v) 2-Propanol , 20%(w/v) Polyethylene glycol 4,000 |