8IYE
Structure of VldE-D158N in complex with GDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-08-23 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 48.044, 84.567, 120.928 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.040 - 1.900 |
R-factor | 0.238 |
Rwork | 0.236 |
R-free | 0.28310 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.685 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.040 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.094 | 0.544 |
Number of reflections | 74663 | 4474 |
<I/σ(I)> | 6.7 | 1.7 |
Completeness [%] | 97.9 | |
Redundancy | 4.1 | |
CC(1/2) | 0.996 | 0.850 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 100 mM Tris-HCl, pH8.5, 26% PEG 4000 |