8EVV
Apo form of DdlA from Pseudomonas aeruginosa PAO1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-17 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.372, 80.329, 271.978 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.730 - 2.050 |
R-factor | 0.2136 |
Rwork | 0.211 |
R-free | 0.25160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6u1c |
RMSD bond length | 0.002 |
RMSD bond angle | 0.522 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1-4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.730 | 2.090 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.160 | 1.306 |
Rmeas | 0.167 | 1.361 |
Rpim | 0.046 | 0.380 |
Total number of observations | 1309959 | 61181 |
Number of reflections | 99163 | 4821 |
<I/σ(I)> | 10.9 | 1.5 |
Completeness [%] | 100.0 | |
Redundancy | 13.2 | 12.7 |
CC(1/2) | 0.998 | 0.695 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289.15 | 0.2 M Calcium acetate hydrate, 20% PEG 3350 |