Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DXD

[C:Hg2+/Ag+:C--pH 8] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2021-12-12
DetectorDECTRIS EIGER2 X 9M
Wavelength(s)1.00743
Spacegroup nameH 3
Unit cell lengths105.560, 105.560, 93.091
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution32.610 - 4.280
R-factor0.2311
Rwork0.229
R-free0.26700
Structure solution methodSAD
RMSD bond length0.010
RMSD bond angle1.248
Data reduction softwareautoPROC
Data scaling softwareSTARANISO
Phasing softwareAutoSol
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]65.2304.880
High resolution limit [Å]4.2804.280
Number of reflections3486386
<I/σ(I)>9.1
Completeness [%]83.9
Redundancy10.7
CC(1/2)1.0000.090
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP829840 mM Tris, 125 mM Magnesium sulfate, 12 uM silver nitrate, 24 uM mercury chloride

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon