8DP3
Crystal structure of coxsackievirus B3 cloverleaf RNA replication element
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97911 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 122.173, 48.698, 144.653 |
Unit cell angles | 90.00, 112.92, 90.00 |
Refinement procedure
Resolution | 66.620 - 1.910 |
R-factor | 0.2108 |
Rwork | 0.209 |
R-free | 0.25940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6b3k |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.19.1)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 66.640 | 1.950 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.080 | 0.706 |
Rmeas | 0.080 | 0.850 |
Rpim | 0.052 | 0.465 |
Number of reflections | 60296 | 17592 |
<I/σ(I)> | 10 | |
Completeness [%] | 97.4 | 89.6 |
Redundancy | 3.3 | 3.1 |
CC(1/2) | 0.997 | 0.743 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 298 | Magnesium Acetate Tetrahydrate (0.01 M), MES Monohydrate (0.05 M), Ammonium Sulfate (2.5 M) |