Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DP3

Crystal structure of coxsackievirus B3 cloverleaf RNA replication element

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2021-12-11
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97911
Spacegroup nameC 1 2 1
Unit cell lengths122.173, 48.698, 144.653
Unit cell angles90.00, 112.92, 90.00
Refinement procedure
Resolution66.620 - 1.910
R-factor0.2108
Rwork0.209
R-free0.25940
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6b3k
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.19.1))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]66.6401.950
High resolution limit [Å]1.9001.900
Rmerge0.0800.706
Rmeas0.0800.850
Rpim0.0520.465
Number of reflections6029617592
<I/σ(I)>10
Completeness [%]97.489.6
Redundancy3.33.1
CC(1/2)0.9970.743
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5298Magnesium Acetate Tetrahydrate (0.01 M), MES Monohydrate (0.05 M), Ammonium Sulfate (2.5 M)

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon