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8DHL

Tannerella forsythia beta-glucuronidase (L2)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2019-04-04
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.96802
Spacegroup nameP 21 21 21
Unit cell lengths77.983, 119.209, 209.883
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution78.770 - 2.300
R-factor0.1704
Rwork0.170
R-free0.21030
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5uj6
Data reduction softwareXDS
Data scaling softwareAimless (0.7.7)
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4489)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]103.660103.6602.340
High resolution limit [Å]2.30012.3902.300
Rmerge0.1930.1190.563
Rmeas0.2100.1330.610
Rpim0.0810.0570.234
Total number of observations575179389129550
Number of reflections875516734405
<I/σ(I)>710.73.3
Completeness [%]99.999.8100
Redundancy6.65.86.7
CC(1/2)0.9790.9850.859
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.8293.156% (w/v) PEG8000, 8% (v/v) ethylene glycol, 2% (v/v) glycerol, 0.1 M Tris-HCl

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PDB entries from 2024-05-15

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