8CH4
Crystal structure of the ring cleaving dioxygenase 5-nitrosalicylate 1,2-dioxygenase from Bradyrhizobium sp.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 11.2C |
Synchrotron site | ELETTRA |
Beamline | 11.2C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.427, 143.173, 60.076 |
Unit cell angles | 90.00, 107.33, 90.00 |
Refinement procedure
Resolution | 40.000 - 2.100 |
R-factor | 0.21899 |
Rwork | 0.216 |
R-free | 0.27642 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.364 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.140 | 48.140 | 2.230 |
High resolution limit [Å] | 2.100 | 6.260 | 2.100 |
Rmerge | 0.166 | 0.039 | 1.587 |
Rmeas | 0.180 | 0.043 | 1.722 |
Number of reflections | 46889 | 1809 | 7465 |
<I/σ(I)> | 9.09 | ||
Completeness [%] | 99.2 | ||
Redundancy | 6.8 | ||
CC(1/2) | 0.997 | 0.999 | 0.682 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 296 | 30% MPD, 5% PEG 400, 100 mM TRIS-HCl pH 8.5 |