8BIT
Crystal structure of acyl-CoA synthetase from Metallosphaera sedula in complex with Coenzyme A and acetyl-AMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-23 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 105.806, 93.190, 131.685 |
Unit cell angles | 90.00, 91.12, 90.00 |
Refinement procedure
Resolution | 52.950 - 3.100 |
R-factor | 0.21387 |
Rwork | 0.210 |
R-free | 0.27664 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3b7w |
RMSD bond length | 0.009 |
RMSD bond angle | 2.000 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.950 | 3.310 |
High resolution limit [Å] | 3.100 | 3.100 |
Rmerge | 0.207 | 1.132 |
Rmeas | 0.246 | 1.350 |
Rpim | 0.132 | 0.728 |
Total number of observations | 14154 | |
Number of reflections | 23358 | 4194 |
<I/σ(I)> | 4.2 | 1 |
Completeness [%] | 99.9 | |
Redundancy | 3.4 | 3.4 |
CC(1/2) | 0.981 | 0.735 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.2 | 293 | Protein solution(~3 mg/ml) was mixed to a final volume of 1 uL in 1:1 ratio with reservoir solution containing 0.1M acetate pH 5.2, 0.2M NaCl, 6-8% PEG 1500. |