8ASM
Cobalt(II) bound to a non-canonical quadruplex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU PhotonJet-R |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-06-27 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.5418 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 21.898, 58.659, 45.567 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 18.710 - 1.700 |
R-factor | 0.1789 |
Rwork | 0.178 |
R-free | 0.19220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1mf5 |
RMSD bond length | 0.009 |
RMSD bond angle | 0.984 |
Data reduction software | CrysalisPro (42.60a) |
Data scaling software | CrysalisPro (42.60a) |
Phasing software | PHASER (1.20.1_4487) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 18.710 | 1.750 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.042 | |
Rmeas | 0.047 | |
Rpim | 0.021 | |
Number of reflections | 3466 | 294 |
<I/σ(I)> | 30.1 | |
Completeness [%] | 99.9 | |
Redundancy | 5 | |
CC(1/2) | 0.999 | 0.994 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.7 | 291 | 2 ul 40 mM sodium cacodylate, 1 ul 80 mM hexammine (III) cobalt, 1 ul 10% MPD, 2 ul 800 mM potassium chloride, ul 30 mM sodium chloride, 2 ul 1 mM DNA |