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7Y5Y

X-ray Structure of Stay-Green (SGR) from Anaerolineae bacterium.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL44XU
Synchrotron siteSPring-8
BeamlineBL44XU
Temperature [K]100
Detector technologyPIXEL
Collection date2021-07-23
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.90000
Spacegroup nameP 61 2 2
Unit cell lengths80.331, 80.331, 224.803
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution19.770 - 1.850
R-factor0.2187
Rwork0.218
R-free0.23920
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)AlphaFold2 predicted structure of rice SGR (UniProt: Q652K1)
RMSD bond length0.009
RMSD bond angle1.328
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (1.18.2_3874)
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.7401.840
High resolution limit [Å]1.7501.750
Rmerge0.0611.158
Number of reflections440946906
<I/σ(I)>14.07
Completeness [%]99.4
Redundancy6.5
CC(1/2)0.9990.829
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5298100 mM Tris-HCl (pH 8.5), 200 mM Ammonium phosphate monobasic and 50% (v/v) 2-Methyl-2,4-pentanediol

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