7SO8
Crystal structure of Glutathione S-Transferase from Shrimp Litopenaeus vannamei in complex with silver ions and a molecules of Glutathione binding in G-site and H-site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-06-12 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 57.390, 93.020, 169.110 |
Unit cell angles | 90.00, 90.75, 90.00 |
Refinement procedure
Resolution | 56.370 - 2.200 |
R-factor | 0.1949 |
Rwork | 0.191 |
R-free | 0.25980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5an1 |
Data reduction software | XDS (VERSION Jan 26,2018) |
Data scaling software | XSCALE (VERSION Jan 26, 2018) |
Phasing software | PHASER (7.0.076) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 56.370 | 3.760 | 2.370 |
High resolution limit [Å] | 2.200 | 2.990 | 2.200 |
Rmerge | 0.618 | 0.122 | 0.579 |
Rmeas | 0.751 | 0.149 | 0.704 |
Rpim | 0.423 | 0.084 | 0.396 |
Number of reflections | 88718 | 17849 | 17530 |
<I/σ(I)> | 6.6 | 8.7 | 2.1 |
Completeness [%] | 98.2 | 98.7 | 97.6 |
Redundancy | 3.104 | 3.1 | 3.1 |
CC(1/2) | 0.627 | 0.983 | 0.660 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.5 | 277.15 | 100 mM ammonium sulphate, 100 Bis-Tris pH 6.5, 30% PEG 3350, 300 uM silver nitrate |