7R6A
Crystal structure of mutant L124D/R125A/C273S of L-Asparaginase I from Yersinia pestis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 79.121, 98.911, 180.260 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.880 - 1.890 |
R-factor | 0.1576 |
Rwork | 0.157 |
R-free | 0.21070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ntx |
RMSD bond length | 0.018 |
RMSD bond angle | 2.104 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.920 |
High resolution limit [Å] | 1.890 | 1.890 |
Rmerge | 0.088 | 0.718 |
Rpim | 0.035 | 0.311 |
Number of reflections | 113101 | 5625 |
<I/σ(I)> | 22.8 | 2.2 |
Completeness [%] | 99.1 | 99.9 |
Redundancy | 7.2 | 6.1 |
CC(1/2) | 0.997 | 0.783 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7 | 293 | 3.5 M Sodium formate, pH 7.0 |