7PN0
Crystal structure of the Phosphorybosylpyrophosphate synthetase II from Thermus thermophilus at R32 space group
Replaces: 7AWOExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9790 |
Spacegroup name | H 3 2 |
Unit cell lengths | 106.290, 106.290, 333.290 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.770 - 1.850 |
R-factor | 0.1879 |
Rwork | 0.186 |
R-free | 0.22120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5t3o |
RMSD bond length | 0.011 |
RMSD bond angle | 1.668 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.890 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.105 | 0.546 |
Number of reflections | 59412 | 4323 |
<I/σ(I)> | 14.31 | |
Completeness [%] | 100.0 | |
Redundancy | 7.01 | |
CC(1/2) | 0.999 | 0.905 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | COUNTER-DIFFUSION | 293 | 1,7M lithium sulphate, 0,1M HEPES pH 7.5, 0,04%NaN3, 5mM MgCl2 |