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7MGC

Concanavalin A bound to a DNA glycoconjugate, G(Man-T)AC

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2020-02-25
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.0782
Spacegroup nameP 2 21 21
Unit cell lengths69.330, 117.340, 122.400
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution84.700 - 2.920
R-factor0.23168
Rwork0.229
R-free0.27679
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5cna
RMSD bond length0.007
RMSD bond angle1.539
Data reduction softwareiMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]84.7003.080
High resolution limit [Å]2.9202.920
Rmerge0.1480.560
Rmeas0.1600.599
Number of reflections199003178
<I/σ(I)>4.1051
Completeness [%]94.399.75
Redundancy7.397.95
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5295Sitting drop comprising 1 uL of Concanavalin A (40 uM) and G(Man-T)AC (160 uM) + 1 uL crystallization condition (Helix screen, condition H6: 0.1 M potassium chloride, 0.002 M spermine tetrahydrochloride, 0.05 M bis-Tris (pH 7), 15% w/v PEG 2000 MME). Reservoir contained 70 uL of crystallization condition

220113

PDB entries from 2024-05-22

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