7MGC
Concanavalin A bound to a DNA glycoconjugate, G(Man-T)AC
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-25 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0782 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 69.330, 117.340, 122.400 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 84.700 - 2.920 |
R-factor | 0.23168 |
Rwork | 0.229 |
R-free | 0.27679 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5cna |
RMSD bond length | 0.007 |
RMSD bond angle | 1.539 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 84.700 | 3.080 |
High resolution limit [Å] | 2.920 | 2.920 |
Rmerge | 0.148 | 0.560 |
Rmeas | 0.160 | 0.599 |
Number of reflections | 19900 | 3178 |
<I/σ(I)> | 4.1051 | |
Completeness [%] | 94.3 | 99.75 |
Redundancy | 7.39 | 7.95 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 295 | Sitting drop comprising 1 uL of Concanavalin A (40 uM) and G(Man-T)AC (160 uM) + 1 uL crystallization condition (Helix screen, condition H6: 0.1 M potassium chloride, 0.002 M spermine tetrahydrochloride, 0.05 M bis-Tris (pH 7), 15% w/v PEG 2000 MME). Reservoir contained 70 uL of crystallization condition |