Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7KPH

SARS-CoV-2 Main Protease in mature form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS SIRIUS BEAMLINE MANACA
Synchrotron siteLNLS SIRIUS
BeamlineMANACA
Temperature [K]100
Detector technologyPIXEL
Collection date2020-11-05
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.368480
Spacegroup nameC 1 2 1
Unit cell lengths112.995, 52.847, 44.741
Unit cell angles90.00, 102.86, 90.00
Refinement procedure
Resolution55.080 - 1.460
R-factor0.1677
Rwork0.167
R-free0.18090
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5r8t
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.18.2)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]55.08055.0801.540
High resolution limit [Å]1.4604.6201.460
Rmerge0.0490.0380.461
Rmeas0.0580.0450.550
Rpim0.0310.0240.298
Total number of observations142926511419535
Number of reflections4224914515935
<I/σ(I)>12.830.32.4
Completeness [%]94.998.891.2
Redundancy3.43.53.3
CC(1/2)0.9980.9970.833
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52930.1 M Bis-Tris, 25% PEG 3350 cryo 30% PEG 400

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon