7K8O
Crystal structure of an anti-SARS-CoV-2 human neutralizing antibody Fab fragment, C002
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-1 |
Synchrotron site | SSRL |
Beamline | BL12-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 92.271, 92.271, 130.863 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.100 - 1.950 |
R-factor | 0.2049 |
Rwork | 0.204 |
R-free | 0.23720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7bz5 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.713 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.100 | 1.990 |
High resolution limit [Å] | 1.920 | 1.920 |
Rmerge | 0.072 | 1.480 |
Rpim | 0.024 | 0.334 |
Number of reflections | 90103 | 413 |
<I/σ(I)> | 13 | |
Completeness [%] | 99.2 | 99.7 |
Redundancy | 9.9 | |
CC(1/2) | 0.999 | 0.807 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.2 M lithium sulfate monohydrate, 20% w/v PEG3350 |