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7JWT

Crystal structure of human ALDH1A1 bound to compound (R)-28

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
Collection date2018-03-20
DetectorADSC QUANTUM 210r
Wavelength(s)0.98
Spacegroup nameP 4 2 2
Unit cell lengths109.205, 109.205, 83.219
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution109.210 - 1.800
R-factor0.2174
Rwork0.215
R-free0.25340
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6dum
RMSD bond length0.008
RMSD bond angle1.291
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]109.21050.0001.830
High resolution limit [Å]1.8004.8801.800
Rmerge0.1110.0500.591
Rmeas0.1210.0550.639
Rpim0.0460.0210.240
Number of reflections4691324732312
<I/σ(I)>8.84
Completeness [%]99.595.7100
Redundancy6.96.36.9
CC(1/2)0.9980.799
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.4293100 mM sodium BisTris, pH 6.4, 9% PEG3350, 200 mM NaCl, and 5-10 mM YbCl3, 250 uM 6-((1-(3-hydroxyphenyl)ethyl)thio)-1-methyl-5-phenyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one, 1% v/v DMSO

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