7GMY
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with EDJ-MED-e69ed63d-13 (Mpro-P2242)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91788 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 68.015, 100.931, 104.340 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 72.540 - 1.838 |
R-factor | 0.2226 |
Rwork | 0.221 |
R-free | 0.25530 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.970 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (20-OCT-2021)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.544 | 2.036 |
High resolution limit [Å] | 1.838 | 1.838 |
Rmerge | 0.125 | 1.176 |
Rmeas | 0.135 | 1.272 |
Rpim | 0.052 | 0.481 |
Total number of observations | 257575 | 13332 |
Number of reflections | 38619 | 1931 |
<I/σ(I)> | 9 | 1.6 |
Completeness [%] | 61.1 | |
Redundancy | 6.7 | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |