7GDN
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with EDJ-MED-0e996074-1 (Mpro-x11159)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-07-24 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91259 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 112.315, 52.689, 44.663 |
| Unit cell angles | 90.00, 102.80, 90.00 |
Refinement procedure
| Resolution | 54.760 - 1.351 |
| R-factor | 0.161 |
| Rwork | 0.159 |
| R-free | 0.19670 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.070 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | BUSTER (2.10.3 (20-MAY-2020)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 54.750 | 1.370 |
| High resolution limit [Å] | 1.350 | 1.350 |
| Rmerge | 0.060 | 0.978 |
| Rmeas | 0.074 | 1.341 |
| Rpim | 0.042 | 0.912 |
| Total number of observations | 132099 | 2136 |
| Number of reflections | 52100 | 1549 |
| <I/σ(I)> | 9 | 0.3 |
| Completeness [%] | 93.5 | |
| Redundancy | 2.5 | 1.4 |
| CC(1/2) | 0.997 | 0.328 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |
