7EJZ
Complex Structure of antibody BD-503 and RBD-S477N of COVID-19
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-01-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 80.711, 145.915, 146.789 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.660 - 3.630 |
R-factor | 0.2455 |
Rwork | 0.241 |
R-free | 0.28410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7bwj |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.660 | 3.763 |
High resolution limit [Å] | 3.630 | 3.633 |
Rmeas | 0.469 | |
Rpim | 0.130 | 0.292 |
Number of reflections | 10003 | 930 |
<I/σ(I)> | 7.96 | |
Completeness [%] | 96.0 | 81.45 |
Redundancy | 12.8 | 12.9 |
CC(1/2) | 0.958 | 0.862 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.1M Magnesium chloride hexahydrate, 0.1M Sodium citrate, pH 5.0, 15% (w/v) PEG 4000 |