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7ECC

M4 family peptidase PlM4P-mature form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2020-12-29
DetectorDECTRIS EIGER R 4M
Wavelength(s)1.54056
Spacegroup nameP 21 21 21
Unit cell lengths43.738, 85.272, 85.487
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.130 - 2.000
R-factor0.2401
Rwork0.238
R-free0.28780
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3nqx
RMSD bond length0.009
RMSD bond angle1.594
Data reduction softwareAimless
Data scaling softwareAimless (0.7.4)
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]20.13020.1202.050
High resolution limit [Å]2.0008.9402.000
Rmerge0.2460.1131.609
Rmeas0.2620.1181.774
Rpim0.0850.0340.735
Total number of observations30449012
Number of reflections222532721589
<I/σ(I)>4.211.30.5
Completeness [%]99.891.399.9
Redundancy8.811.25.7
CC(1/2)0.9700.9900.642
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293Molecular Dimensions Morpheus II C12: 4mM Alkalis, 0.1M buffer 6, 31% precipitant mix 8

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PDB entries from 2024-05-29

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