7ECC
M4 family peptidase PlM4P-mature form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-29 |
Detector | DECTRIS EIGER R 4M |
Wavelength(s) | 1.54056 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 43.738, 85.272, 85.487 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.130 - 2.000 |
R-factor | 0.2401 |
Rwork | 0.238 |
R-free | 0.28780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3nqx |
RMSD bond length | 0.009 |
RMSD bond angle | 1.594 |
Data reduction software | Aimless |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.130 | 20.120 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.246 | 0.113 | 1.609 |
Rmeas | 0.262 | 0.118 | 1.774 |
Rpim | 0.085 | 0.034 | 0.735 |
Total number of observations | 3044 | 9012 | |
Number of reflections | 22253 | 272 | 1589 |
<I/σ(I)> | 4.2 | 11.3 | 0.5 |
Completeness [%] | 99.8 | 91.3 | 99.9 |
Redundancy | 8.8 | 11.2 | 5.7 |
CC(1/2) | 0.970 | 0.990 | 0.642 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Molecular Dimensions Morpheus II C12: 4mM Alkalis, 0.1M buffer 6, 31% precipitant mix 8 |