7E98
Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 21% oxygen saturation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2016-11-03 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.100 |
Spacegroup name | H 3 2 |
Unit cell lengths | 112.245, 112.245, 271.388 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.840 - 2.200 |
R-factor | 0.1891 |
Rwork | 0.188 |
R-free | 0.21930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2zfo |
RMSD bond length | 0.003 |
RMSD bond angle | 0.674 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.330 |
High resolution limit [Å] | 2.200 | 2.200 |
Number of reflections | 33753 | 5320 |
<I/σ(I)> | 10.4 | 1.5 |
Completeness [%] | 99.7 | |
Redundancy | 10.3 | |
CC(1/2) | 0.997 | 0.666 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 11-12 % (w/v) polyethylene glycol (PEG) 10,000, 10 mM CaCl2, 200 mM Tris-HCl pH 8.0 |