7C1O
Crystal structure of Aquifex aeolicus Era Y63A bound to GDP.AlF4-
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-X |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2018-07-03 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 36.377, 72.860, 120.910 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.520 - 2.180 |
R-factor | 0.2081 |
Rwork | 0.205 |
R-free | 0.23600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3iev |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.21) |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.520 | 46.520 | 2.240 |
High resolution limit [Å] | 2.180 | 9.750 | 2.180 |
Rmerge | 0.077 | 0.024 | 1.052 |
Rmeas | 0.083 | 0.027 | 1.131 |
Rpim | 0.030 | 0.011 | 0.409 |
Total number of observations | 135548 | 1537 | 9213 |
Number of reflections | 17524 | 250 | 1248 |
<I/σ(I)> | 16.9 | 52.1 | 1.8 |
Completeness [%] | 99.9 | 99.4 | 98.5 |
Redundancy | 7.7 | 6.1 | 7.4 |
CC(1/2) | 0.999 | 0.999 | 0.622 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 291 | 10 mg/ml protein with equal volume of 100 mM Bis-Tris, 200 mM Ammonium acetate, 18 % PEG 10000 |