7C0V
Crystal structure of a dinucleotide-binding protein (Y224A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form I)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-04-26 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 66.330, 57.780, 121.840 |
Unit cell angles | 90.00, 94.99, 90.00 |
Refinement procedure
Resolution | 60.760 - 1.900 |
R-factor | 0.1971 |
Rwork | 0.195 |
R-free | 0.24560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c0f |
RMSD bond length | 0.013 |
RMSD bond angle | 1.795 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.760 | 60.690 | 1.940 |
High resolution limit [Å] | 1.900 | 9.110 | 1.900 |
Rmerge | 0.152 | 0.098 | 0.502 |
Rmeas | 0.185 | 0.118 | 0.609 |
Rpim | 0.104 | 0.065 | 0.339 |
Total number of observations | 2020 | 12057 | |
Number of reflections | 68792 | 684 | 4085 |
<I/σ(I)> | 5.9 | 9 | 2.3 |
Completeness [%] | 94.6 | 95 | 87.6 |
Redundancy | 2.9 | 3 | 3 |
CC(1/2) | 0.964 | 0.974 | 0.654 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 0.2M ammonium phosphate, 0.1M sodium cacodylate pH 6.5, 30% PEG 8000 |