7B1X
Crystal structure of cold-active esterase PMGL3 from permafrost metagenomic library
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-26 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9677 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 103.800, 98.400, 75.200 |
Unit cell angles | 90.00, 128.10, 90.00 |
Refinement procedure
Resolution | 37.280 - 2.300 |
R-factor | 0.1649 |
Rwork | 0.162 |
R-free | 0.23070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3fak |
RMSD bond length | 0.012 |
RMSD bond angle | 2.074 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.280 | 50.000 | 2.200 |
High resolution limit [Å] | 2.100 | 10.000 | 2.100 |
Rmerge | 0.109 | 0.050 | 0.529 |
Rmeas | 0.118 | 0.053 | 0.686 |
Total number of observations | 203107 | ||
Number of reflections | 33658 | 336 | 4136 |
<I/σ(I)> | 14.58 | 53.39 | 1.54 |
Completeness [%] | 96.2 | 96.6 | 91.7 |
Redundancy | 6.034 | 7.179 | 2.263 |
CC(1/2) | 0.998 | 0.998 | 0.661 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 288 | 0.1M Sodium citrate tribasic dihydrate pH 5.6; 20% isopropanol; 20% PEG4000 |