7AUI
Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with InsP6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-14 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.979260 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 61.776, 61.776, 96.458 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.830 - 1.980 |
R-factor | 0.2083 |
Rwork | 0.208 |
R-free | 0.22060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fvv |
RMSD bond length | 0.006 |
RMSD bond angle | 1.546 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.230 | 2.030 |
High resolution limit [Å] | 1.980 | 1.980 |
Rmerge | 0.050 | 0.663 |
Rpim | 0.013 | 0.159 |
Number of reflections | 15385 | 1047 |
<I/σ(I)> | 32.3 | 5.5 |
Completeness [%] | 100.0 | 100 |
Redundancy | 17.3 | 18.5 |
CC(1/2) | 1.000 | 0.920 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 291 | 25% PEG 6000, 0.1 M Sodium acetate pH 4.5, 0.1 M NaCl. Protein:precipitant ratio 2:1. Protein buffer: 20 mM Tris pH 8.0, 150 mM NaCl, 1 mM DTT, 5 mM InsP6. |