6XUE
Human Ecto-5'-nucleotidase (CD73) in complex with A2396 (compound 74 in publication) in the closed form in crystal form IV
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91840 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 94.019, 232.175, 54.830 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.300 - 1.940 |
R-factor | 0.19 |
Rwork | 0.190 |
R-free | 0.21900 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 4h2i |
RMSD bond length | 0.010 |
RMSD bond angle | 1.080 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | autoBUSTER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.300 | 28.300 | 2.050 |
High resolution limit [Å] | 1.940 | 5.770 | 1.940 |
Rmerge | 0.103 | 0.026 | 2.297 |
Rmeas | 0.109 | 0.029 | 2.373 |
Total number of observations | 868437 | ||
Number of reflections | 90087 | 6515 | 27325 |
<I/σ(I)> | 15.27 | 44.8 | 0.96 |
Completeness [%] | 99.6 | 99.6 | 97.8 |
Redundancy | 9.66 | 5.059 | 9.73 |
CC(1/2) | 0.999 | 1.000 | 0.477 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | Reservoir: 13 % PEG 6000, 0.1 M MES pH 6.0. Drop: 1 micro-L crystallization buffer + 1 micro-L of 3 mg/mL CD73 in 10 mM Tris pH 8.0, 10 micro-M ZnCl2, 3 % DMSO, compound: saturated solution. Cryo: 20% PEG200 in crystallization drop. |