6WIU
Crystal structure of a beta-glucosidase from Exiguobacterium marinum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-18 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.459 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 106.161, 171.897, 213.522 |
Unit cell angles | 90.00, 95.71, 90.00 |
Refinement procedure
Resolution | 32.709 - 3.511 |
R-factor | 0.2647 |
Rwork | 0.263 |
R-free | 0.29210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dt5 |
RMSD bond length | 0.004 |
RMSD bond angle | 1.146 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX (1.8.3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.709 | 32.709 | 3.710 |
High resolution limit [Å] | 3.500 | 10.280 | 3.500 |
Rmerge | 0.406 | 0.050 | 1.994 |
Rmeas | 0.454 | 0.056 | 2.221 |
Number of reflections | 93391 | 3801 | 15361 |
<I/σ(I)> | 3.95 | 26.83 | 0.82 |
Completeness [%] | 99.7 | 97.2 | 99.5 |
Redundancy | 4.975 | 4.997 | 5.108 |
CC(1/2) | 0.982 | 0.997 | 0.438 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 20 % (w/v) PEG 3350; 0.2 M sodium bromide; 0.1 M Bis tris propane pH 6.5 |