6VSR
Crystal structure of macaque anti-HIV-1 antibody RM20F
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 61.459, 75.646, 115.068 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.721 - 2.176 |
R-factor | 0.1992 |
Rwork | 0.197 |
R-free | 0.24090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5csz |
RMSD bond length | 0.002 |
RMSD bond angle | 0.551 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.730 | 2.240 |
High resolution limit [Å] | 2.176 | 2.200 |
Number of reflections | 28053 | 1364 |
<I/σ(I)> | 7.7 | |
Completeness [%] | 98.6 | |
Redundancy | 4 | |
CC(1/2) | 0.840 | 0.540 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | The RM20F Fab was crystallized from a solution containing 10 mg/mL protein in 1X TBS with a well solution containing 0.1M MES, pH 5.0 and 2M ammonium sulfate. The crystals were cryoprotected by soaking in a well solution supplemented with 30% ethylene glycol |