6VDW
Crystal Structure of Dehaloperoxidase B in Complex with cofactor Manganese(III) Porphyrin and Substrate 4-nitrophenol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-04-04 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.301, 67.767, 67.609 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.580 - 1.500 |
R-factor | 0.1654 |
Rwork | 0.164 |
R-free | 0.19930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ixf |
RMSD bond length | 0.019 |
RMSD bond angle | 2.035 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (dev_3714) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.580 | 1.530 |
High resolution limit [Å] | 1.500 | 1.500 |
Number of reflections | 44226 | 2639 |
<I/σ(I)> | 19.5 | |
Completeness [%] | 99.8 | |
Redundancy | 5.4 | |
CC(1/2) | 0.990 | 0.800 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 0.2 M Ammonium Sulphate MPEG 2000, 29-33% |