6UQ3
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-23 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97665 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 169.189, 222.584, 194.612 |
Unit cell angles | 90.00, 101.34, 90.00 |
Refinement procedure
Resolution | 49.268 - 3.470 |
R-factor | 0.235 |
Rwork | 0.234 |
R-free | 0.28570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6blo |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.270 | 3.530 |
High resolution limit [Å] | 3.470 | 3.470 |
Rmerge | 0.580 | 2.776 |
Rmeas | 0.626 | 2.990 |
Rpim | 0.235 | 1.105 |
Total number of observations | 636868 | 32397 |
Number of reflections | 91067 | 4503 |
<I/σ(I)> | 4.9 | 0.9 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7 | 7.2 |
CC(1/2) | 0.950 | 0.333 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 390mM (NH4)2HPO4/NaH2PO4, pH 6.5, 5mM dioxane, 5mM DTT, 10-12% PEG6000 |