Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6TSI

cd1 nitrite reductase NirS with bound dihydro-heme d1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE X11
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineX11
Temperature [K]100
Detector technologyPIXEL
Collection date2018-12-07
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)1.738900
Spacegroup nameP 21 21 2
Unit cell lengths163.762, 91.093, 112.706
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution79.610 - 2.380
R-factor0.24
Rwork0.238
R-free0.27950
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)1nir
RMSD bond length0.010
RMSD bond angle1.370
Data reduction softwareXDS
Data scaling softwareSTARANISO
Phasing softwarePHENIX
Refinement softwarePHENIX (1.18rc1-3769)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]112.7102.620
High resolution limit [Å]2.3802.380
Rpim0.1100.540
Number of reflections500952505
<I/σ(I)>6.61.6
Completeness [%]92.644.5
Redundancy12.59.6
CC(1/2)0.9900.640
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP82931.9M K2HPO4 0.1M Tris-HCl pH 8

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon