6SFJ
Crystal structure of p38 alpha in complex with compound 77 (MCP41)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-26 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 0.92819 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.339, 76.109, 78.950 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.800 - 1.950 |
R-factor | 0.1868 |
Rwork | 0.185 |
R-free | 0.22670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lar |
RMSD bond length | 0.012 |
RMSD bond angle | 1.364 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.800 | 50.790 | 2.020 |
High resolution limit [Å] | 1.950 | 7.550 | 1.950 |
Rmerge | 0.068 | 0.024 | 0.924 |
Rmeas | 0.080 | 0.026 | 1.086 |
Rpim | 0.030 | 0.010 | 0.405 |
Number of reflections | 29720 | 588 | 2874 |
<I/σ(I)> | 16.4 | 2.2 | |
Completeness [%] | 99.7 | 98.3 | 99.8 |
Redundancy | 6.8 | 6.3 | 6.8 |
CC(1/2) | 0.999 | 0.999 | 0.655 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 277.15 | 17.5% MMW PEG smears, 0.1M MES pH 6.2 |