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6S6D

Crystal structure of RagA-Q66L-GTP/RagC-S75N-GDP GTPase heterodimer complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID30B
Synchrotron siteESRF
BeamlineID30B
Temperature [K]100
Detector technologyPIXEL
Collection date2018-05-11
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9762
Spacegroup nameP 21 21 21
Unit cell lengths71.504, 81.439, 246.033
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.290 - 2.500
R-factor0.2127
Rwork0.209
R-free0.28660
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.704
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.29049.2902.650
High resolution limit [Å]2.5007.4202.500
Rmerge0.0700.0331.047
Rmeas0.0770.0361.136
Total number of observations331756
Number of reflections5058920928018
<I/σ(I)>16.6945.881.94
Completeness [%]99.898.799
Redundancy6.5585.5766.671
CC(1/2)0.9990.9980.654
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293100mM MOPSO, Bis-Tris pH 6.5, 40mM polyamines ( mixture of spermine tetrahydrochloride, spermidine trihydrochloride, 1,4. diaminobutane dihydrochloride, 0.1 M D/L-ornithine monohydrochloride), 10% (w/v) PEG 8000. 20% (v/v) 1,5 - Pentanediol and 24 % (v/v) glycerol.

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PDB entries from 2024-05-15

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