6RGG
Photorhabdus laumondii lectin PLL2 in complex with O-methylated PGL-1-derived disaccharide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-30 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9763 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 68.304, 89.347, 68.401 |
Unit cell angles | 90.00, 101.35, 90.00 |
Refinement procedure
Resolution | 67.030 - 2.200 |
R-factor | 0.20019 |
Rwork | 0.199 |
R-free | 0.22356 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.430 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP (11.4.06) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.030 | 2.320 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.096 | 0.922 |
Number of reflections | 40910 | 5878 |
<I/σ(I)> | 5.1 | 1.1 |
Completeness [%] | 99.8 | 99.8 |
Redundancy | 3.8 | 3.8 |
CC(1/2) | 0.993 | 0.541 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 293 | 12.5% PEG 4000, 0.1 M sodium acetate pH 4.6 |