6PNK
Crystal structure of the G-quadruplex formed by (GGGTT)3GGG in complex with N-methylmesoporphryin IX
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 196 |
Detector technology | PIXEL |
Collection date | 2018-03-10 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9791 |
Spacegroup name | H 3 2 |
Unit cell lengths | 60.930, 60.930, 194.342 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 64.780 - 2.390 |
R-factor | 0.2364 |
Rwork | 0.235 |
R-free | 0.24900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6p45 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.761 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 64.780 | 2.473 |
High resolution limit [Å] | 2.388 | 2.388 |
Rmerge | 0.067 | |
Number of reflections | 5748 | 492 |
<I/σ(I)> | 21.4 | 0.6 |
Completeness [%] | 97.5 | 86.9 |
Redundancy | 19 | 19 |
CC(1/2) | 0.369 | 0.369 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 0.85 M sodium formate, 17.5% PEG 20000, 0.05 M Bis-Tris pH 7.0 |