6PIA
Crystal structure of Marinobacter subterrani acetylpolyamine amidohydrolase (msAPAH) complexed with 6-[(3-aminopropyl)amino]-N-hydroxyhexanamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 65.744, 163.170, 65.744 |
Unit cell angles | 90.00, 94.44, 90.00 |
Refinement procedure
Resolution | 46.270 - 1.750 |
R-factor | 0.1765 |
Rwork | 0.175 |
R-free | 0.21160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB: 4ZUM |
RMSD bond length | 0.006 |
RMSD bond angle | 0.839 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.270 | 1.810 |
High resolution limit [Å] | 1.750 | 1.750 |
Rpim | 0.085 | 0.470 |
Number of reflections | 131376 | 12851 |
<I/σ(I)> | 7.3 | |
Completeness [%] | 95.6 | |
Redundancy | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 10 mg/ml msAPAH Protein, 0.2 M calcium chloride dihydrate, 20% w/v PEG 3350, 1:1 ratio protein to precipitant |