6P3K
Crystal structure of LigU(C100S)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL14-1 |
Synchrotron site | SSRL |
Beamline | BL14-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.1271 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 97.417, 142.334, 60.350 |
Unit cell angles | 90.00, 111.72, 90.00 |
Refinement procedure
Resolution | 42.020 - 1.880 |
R-factor | 0.1752 |
Rwork | 0.173 |
R-free | 0.21500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3g7k |
RMSD bond length | 0.014 |
RMSD bond angle | 1.249 |
Data reduction software | HKL-2000 (2.3.10) |
Data scaling software | HKL-2000 (2.3.10) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.910 |
High resolution limit [Å] | 1.880 | 5.100 | 1.880 |
Rmerge | 0.046 | 0.029 | 0.242 |
Rmeas | 0.055 | 0.035 | 0.315 |
Rpim | 0.030 | 0.019 | 0.200 |
Number of reflections | 53939 | 2928 | 1447 |
<I/σ(I)> | 22.1 | 2.1 | |
Completeness [%] | 87.3 | 93.2 | 47.1 |
Redundancy | 2.9 | 3.3 | 1.8 |
CC(1/2) | 0.998 | 0.915 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | Well - 200 mM magnesium chloride hexahydrate, 100 mM HEPES/KOH, pH 7.5, 25% (w/v) PEG 3350 Drop - 2 uL enzyme, 2 uL well where the enzyme concentration was 10 mg/mL in 20 mM phosphate buffer pH 7.9 |