6NCZ
Crystal structure of hybrid beta-glucuronidase/beta-galacturonidase from Fusicatenibacter saccharivorans bound to phenyl-thio-beta-D-glucuronide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.033 |
Spacegroup name | P 1 |
Unit cell lengths | 109.134, 116.916, 117.604 |
Unit cell angles | 60.32, 62.53, 87.09 |
Refinement procedure
Resolution | 29.670 - 2.200 |
R-factor | 0.181 |
Rwork | 0.181 |
R-free | 0.21850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lpf |
RMSD bond length | 0.008 |
RMSD bond angle | 0.943 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.700 | 2.280 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.116 | 1.093 |
Rpim | 0.071 | 0.664 |
Number of reflections | 215731 | 21435 |
<I/σ(I)> | 8.3 | 1.1 |
Completeness [%] | 97.4 | 96.8 |
Redundancy | 3.6 | 3.6 |
CC(1/2) | 0.995 | 0.498 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M sodium tartrate dibasic, 20% (w/v) PEG 3350 with 1 mM phenyl-thio-beta-D-glucuronide |